ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR156
source: miRBase, original name: bna-MIR156a (MI0005770)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACTGCTCTTTCTGTCAG mismatches: 1 bulges: 2 |
pre-miRNA
TGACAGAAGAGAGTGAGCACACAAAAGTAATCTGCATATACTGCATTTGCTTCTCTTGCGTGCTCACTGCTCTTTCTGTCAG
dot-bracket secondary structure
((((((((((((((((((((.(((((((((..((((.....)))).))))))...))).))))))))).))).)))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM, FEBS Lett. 581:1464-1474(2007)., "Computational identification of novel microRNAs and targets in Brassica napus"
TGACAGAAGAGAGTGAGCACACAAAAGTAATCTGCATATACTGCATTTGCTTCTCTTGCGTGCTCACTGCTCTTTCTGTCAG
dot-bracket secondary structure
((((((((((((((((((((.(((((((((..((((.....)))).))))))...))).))))))))).))).)))))))).
SIMILARITIES| miRBase aly-MIR156a: 1e-27 PMRD bna-miR156a: 2e-41 microPC miR156: 9e-41 | UniProt no hits RFAM mir-156: 5e-24 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM, FEBS Lett. 581:1464-1474(2007)., "Computational identification of novel microRNAs and targets in Brassica napus"
