ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR157
source: miRBase, original name: bna-MIR156b (MI0006481)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATACTTCTGTCACC mismatches: 0 bulges: 2 |
pre-miRNA
TAGGTTTGAGAGTGATGCTGGTTGTTGACAGAAGATAGAGAGCACTAAGGATGACATGCAAGTACATATGTATGTATCATCACACCGCCTGTGGATGATT
ACAAAAATAAAACCAATTCAAAAGAGAGAGAGAGAGAGCCTGCATGTCTACTCTTTCGTGCTCTCTATACTTCTGTCACCACCATTATTTCTTCTTCTTT
CTTACCTA
dot-bracket secondary structure
(((((..(((((.((((.((((.((.(((((((((((((((((((.(((((.((((((((.((.(.......(((((((((.(((.....)))))))).)
))).............(((......))).......).)).))))))))...))))).))))))))))).)))))))))).)))).)))).......))))
)..)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
TAGGTTTGAGAGTGATGCTGGTTGTTGACAGAAGATAGAGAGCACTAAGGATGACATGCAAGTACATATGTATGTATCATCACACCGCCTGTGGATGATT
ACAAAAATAAAACCAATTCAAAAGAGAGAGAGAGAGAGCCTGCATGTCTACTCTTTCGTGCTCTCTATACTTCTGTCACCACCATTATTTCTTCTTCTTT
CTTACCTA
dot-bracket secondary structure
(((((..(((((.((((.((((.((.(((((((((((((((((((.(((((.((((((((.((.(.......(((((((((.(((.....)))))))).)
))).............(((......))).......).)).))))))))...))))).))))))))))).)))))))))).)))).)))).......))))
)..)))))
SIMILARITIES| miRBase bra-MIR157a: 2e-50 PMRD bna-miR156b: 2e-87 microPC miR157: 5e-48 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
