ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR161
source: miRBase, original name: bna-MIR161 (MI0006479)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAATGCACTGAAAGTGACTA miRNA* GTCACTTTCAATGCGTTGATC mismatches: 1 bulges: 0 |
pre-miRNA
TTTATTGCTTCGATCAATGCACTGAAAGTGACTACACCAGGATTTGTTTTTAAGTTTTTGCTCTCATCTATATGATAAAGATGAAAATTAGCCTCTGATG
TAGTCACTTTCAATGCGTTGATCATAGCATGGAAA
dot-bracket secondary structure
(((((.(((..((((((((((.((((((((((((((.((((...........(((....))).((((((.........)))))).........)))).))
)))))))))))).))))))))))..))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
TTTATTGCTTCGATCAATGCACTGAAAGTGACTACACCAGGATTTGTTTTTAAGTTTTTGCTCTCATCTATATGATAAAGATGAAAATTAGCCTCTGATG
TAGTCACTTTCAATGCGTTGATCATAGCATGGAAA
dot-bracket secondary structure
(((((.(((..((((((((((.((((((((((((((.((((...........(((....))).((((((.........)))))).........)))).))
)))))))))))).))))))))))..))))))))..
SIMILARITIES| miRBase ath-MIR161: 0.000000007 PMRD bna-miR161: 1e-72 microPC miR161: 0.0004 | UniProt no hits RFAM no hits |
Identical with: bna-miR161 from PMRD (MNEST048340) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
