ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR166
source: miRBase, original name: bna-MIR166a (MI0006474)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTTTGGCTCGAAG mismatches: 5 bulges: 0 |
pre-miRNA
TTGAGGGAATGTTGTTTGGCTCGAAGACTCTAGCTTATCATGTTAGATCTTCTTCGATTTAATCGAATCAAACCTCCATGTTTGAGATCTGATTTAGGAT
TTTAGGGTCGTCGGACCAGGCTTCATTCCCCCCAA
dot-bracket secondary structure
....(((((((..((((((..(((.((((((((...(((..((((((((....(((((...))))).((((((......))))))))))))))....)))
.)))))))).)))..))))))..))))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
TTGAGGGAATGTTGTTTGGCTCGAAGACTCTAGCTTATCATGTTAGATCTTCTTCGATTTAATCGAATCAAACCTCCATGTTTGAGATCTGATTTAGGAT
TTTAGGGTCGTCGGACCAGGCTTCATTCCCCCCAA
dot-bracket secondary structure
....(((((((..((((((..(((.((((((((...(((..((((((((....(((((...))))).((((((......))))))))))))))....)))
.)))))))).)))..))))))..))))))).....
SIMILARITIES| miRBase aly-MIR166a: 0.0000000000001 PMRD bna-miR166a: 1e-72 microPC miR166: 6e-31 | UniProt no hits RFAM mir-166: 0.00000000003 |
Identical with: bna-miR166a from PMRD (MNEST048342) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
