ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR166
source: miRBase, original name: bna-MIR166b (MI0006475)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* TGGATGATGCTTGGCTCGAGA mismatches: 4 bulges: 0 |
pre-miRNA
AAGTTCAGGTGGATGATGCTTGGCTCGAGACCATTCAATATGATCATTGTGATGATGATGATGATGATGATAATGATAATGATAATGATGTCGGACCAGG
CTTCATTCCCCTCAACTT
dot-bracket secondary structure
(((((.(((.((((((.((((((..(((.(.((((((.(((.(((((..(.((....)).)..))))).))).)))........))).).)))..)))))
).)))))).))).)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
AAGTTCAGGTGGATGATGCTTGGCTCGAGACCATTCAATATGATCATTGTGATGATGATGATGATGATGATAATGATAATGATAATGATGTCGGACCAGG
CTTCATTCCCCTCAACTT
dot-bracket secondary structure
(((((.(((.((((((.((((((..(((.(.((((((.(((.(((((..(.((....)).)..))))).))).)))........))).).)))..)))))
).)))))).))).)))))
SIMILARITIES| miRBase bna-MIR166c: 4e-19 PMRD bna-miR166b: 2e-21 microPC miR166: 0.00002 | UniProt no hits RFAM mir-166: 1e-16 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
