ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR167_1
source: miRBase, original name: bna-MIR167a (MI0006471)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTAA miRNA* AGATCATGTTCGCAGTTTCACC mismatches: 1 bulges: 0 |
pre-miRNA
GGTGTACAGGCATCTGATGAAGCTGCCAGCATGATCTAATTAACTTTCTTTCTCTGTTGATTTTATGACAATGGAAAAGAGATGAGTGTCGATTAGATCA
TGTTCGCAGTTTCACCCATTGACTGTCGCACC
dot-bracket secondary structure
(((((((((.((...(.(((((((((.(((((((((((((..((.(((..(((((.....((((((....)))))).))))).))).))..)))))))))
)))).))))))))).)...)).)))).)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
GGTGTACAGGCATCTGATGAAGCTGCCAGCATGATCTAATTAACTTTCTTTCTCTGTTGATTTTATGACAATGGAAAAGAGATGAGTGTCGATTAGATCA
TGTTCGCAGTTTCACCCATTGACTGTCGCACC
dot-bracket secondary structure
(((((((((.((...(.(((((((((.(((((((((((((..((.(((..(((((.....((((((....)))))).))))).))).))..)))))))))
)))).))))))))).)...)).)))).)))))
SIMILARITIES| miRBase bra-MIR167c: 6e-71 PMRD bra-miR167c: 6e-71 microPC miR167: 1e-25 | UniProt no hits RFAM MIR167_1: 2e-34 |
Identical with: bra-miR167c from PMRD (MNEST048401) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
