ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR169
source: miRBase, original name: bna-MIR169b (MI0006458)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGA miRNA* GGCAAGTTTTCCTTGGCTACA mismatches: 2 bulges: 0 |
pre-miRNA
GTGACCAAAGTAGTGTGCAGCCAAGGATGACTTGCCGATTTGAAATATATTTTTAATACTTTACTAAGACATCTTTTCAGTTTCAAATTTGTCTTGGAGA
GGCTAGGAAGAAATTACAATTTATTTCGTAGTTTAAAGAAAAAATATGATCGGCAAGTTTTCCTTGGCTACATGTTTCTTTGTGTCGC
dot-bracket secondary structure
((((((((((.((..((.(((((((((.((((((((((((......((((((((.........((((((((..(((........)))..))))))))..(
(((((.((((((((....)))).)))).)))))).....)))))))))))))))))))).))))))))).))..)).))))).)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
GTGACCAAAGTAGTGTGCAGCCAAGGATGACTTGCCGATTTGAAATATATTTTTAATACTTTACTAAGACATCTTTTCAGTTTCAAATTTGTCTTGGAGA
GGCTAGGAAGAAATTACAATTTATTTCGTAGTTTAAAGAAAAAATATGATCGGCAAGTTTTCCTTGGCTACATGTTTCTTTGTGTCGC
dot-bracket secondary structure
((((((((((.((..((.(((((((((.((((((((((((......((((((((.........((((((((..(((........)))..))))))))..(
(((((.((((((((....)))).)))).)))))).....)))))))))))))))))))).))))))))).))..)).))))).)))))
SIMILARITIES| miRBase bna-MIR169a: 3e-18 PMRD bna-miR169b: 3e-104 microPC miR169: 0.00004 | UniProt no hits RFAM MIR169_2: 2e-96 |
Identical with: bna-miR169b from PMRD (MNEST048351) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
