ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR169
source: miRBase, original name: bna-MIR169c (MI0006459)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTA miRNA* GGCAGTCTCCTTGGCTATC mismatches: 0 bulges: 2 |
pre-miRNA
AGATGAATAGAAGAATCATATTTGGTAGCCAAGGATGACTTGCCTATTTCTTGAGAGTAAAATGGGCATGGTGTCATGTTAAAAGTTACTGTAGGTAGTT
TCAATTTGACCATTTTCCTTACAAATGATATTAGGCAGTCTCCTTGGCTATCCTTATATGTTCTTCTCTCTCATCT
dot-bracket secondary structure
((((((..(((((((.(((((..((((((((((((.((((.(((((..(((((.(((.((((((((((((....))))).....(..((((....)))).
.).......))))))).))).)))..))...))))))))))))))))))).))..))))))))))))...))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
AGATGAATAGAAGAATCATATTTGGTAGCCAAGGATGACTTGCCTATTTCTTGAGAGTAAAATGGGCATGGTGTCATGTTAAAAGTTACTGTAGGTAGTT
TCAATTTGACCATTTTCCTTACAAATGATATTAGGCAGTCTCCTTGGCTATCCTTATATGTTCTTCTCTCTCATCT
dot-bracket secondary structure
((((((..(((((((.(((((..((((((((((((.((((.(((((..(((((.(((.((((((((((((....))))).....(..((((....)))).
.).......))))))).))).)))..))...))))))))))))))))))).))..))))))))))))...))))))
SIMILARITIES| miRBase ath-MIR169m: 1e-29 PMRD bna-miR169c: 4e-97 microPC miR169: 0.000009 | UniProt no hits RFAM MIR169_5: 3e-21 |
Identical with: bna-miR169c from PMRD (MNEST048352) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
