ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR169
source: miRBase, original name: bna-MIR169d (MI0006460)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTA miRNA* GGCAGTCTCCTTGGCTATC mismatches: 0 bulges: 2 |
pre-miRNA
GAAGGAGATGTCAAAGATGAATAGGAGATTTCTATTTGGTAGCCAAGGATGACTTGCCTACTTCTTTGCGAAGGAAAATGGTCACGGTGTCATGTTTGAA
AGTGAATATACATTTTTAAGAGTATATCAATTAGTGACCATTTTGCGTATAAAAAGATATTAGGCAGTCTCCTTGGCTATCCTTATATGTTCTTCTTTCT
CATCTCAGACATTTACCTTC
dot-bracket secondary structure
((((((((((((..((((((..((((((....(((..((((((((((((.((((.(((((..(((((.....(.((((((((((((((((.((.((((((
((((......)))))))))).))))))).....))))))))))).)......)))))...))))))))))))))))))).))..)))...))))))...)
)))))..))))))).)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
GAAGGAGATGTCAAAGATGAATAGGAGATTTCTATTTGGTAGCCAAGGATGACTTGCCTACTTCTTTGCGAAGGAAAATGGTCACGGTGTCATGTTTGAA
AGTGAATATACATTTTTAAGAGTATATCAATTAGTGACCATTTTGCGTATAAAAAGATATTAGGCAGTCTCCTTGGCTATCCTTATATGTTCTTCTTTCT
CATCTCAGACATTTACCTTC
dot-bracket secondary structure
((((((((((((..((((((..((((((....(((..((((((((((((.((((.(((((..(((((.....(.((((((((((((((((.((.((((((
((((......)))))))))).))))))).....))))))))))).)......)))))...))))))))))))))))))).))..)))...))))))...)
)))))..))))))).)))))
SIMILARITIES| miRBase bna-MIR169f: 1e-104 PMRD bna-miR169d: 3e-123 microPC miR169: 0.00001 | UniProt no hits RFAM MIR169_5: 1e-18 |
Identical with: bna-miR169d from PMRD (MNEST048353) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
