ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR169_1
source: miRBase, original name: bna-MIR169h (MI0006464)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTGC miRNA* AGGCAGTCTCCTCGGCTATT mismatches: 1 bulges: 2 |
pre-miRNA
GAGAAATGGTGACATGAAGAATGAGAAGTTGTGTGGTAGCCAAGGATGACTTGCCTGCGTCTTAGACCATATCTATCAAAGACTAAAAGATTGATAGTCT
TCGATGAATTGGTTAATCGGTAGGCAGTCTCCTCGGCTATTCAGACAGTTCTCTTTCTCCTCATTTCACATTTCTC
dot-bracket secondary structure
((((((((.(((.((((((((.(((((.((((.((((((((.((((.((((.((((((......(((((..((.(((.(((((((.........))))))
).)))))..))))).....)))))))))))))).))))).))).))))))))).))))..)))).)))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
GAGAAATGGTGACATGAAGAATGAGAAGTTGTGTGGTAGCCAAGGATGACTTGCCTGCGTCTTAGACCATATCTATCAAAGACTAAAAGATTGATAGTCT
TCGATGAATTGGTTAATCGGTAGGCAGTCTCCTCGGCTATTCAGACAGTTCTCTTTCTCCTCATTTCACATTTCTC
dot-bracket secondary structure
((((((((.(((.((((((((.(((((.((((.((((((((.((((.((((.((((((......(((((..((.(((.(((((((.........))))))
).)))))..))))).....)))))))))))))).))))).))).))))))))).))))..)))).)))))))))))
SIMILARITIES| miRBase ath-MIR169h: 5e-35 PMRD bna-miR169h: 4e-97 microPC miR169: 0.0001 | UniProt no hits RFAM MIR169_5: 5e-23 |
Identical with: bna-miR169h from PMRD (MNEST048357) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
