ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR169_1
source: miRBase, original name: bna-MIR169i (MI0006465)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTGC miRNA* AGGCAGTCTCCTTGGCTATC mismatches: 1 bulges: 2 |
pre-miRNA
AGAGTCATGTTTAGTAGCCAAGGATGACTTGCCTGCTCTTTTTCACCTCCATGATTCAATTTTATGTACAGTTTTGGATTACTATGCTTCTAAAGAGTAT
AGTAATTCAAAATCTTGTTGAATCTTTGAGGGTAACAGTTTCAGGCAGTCTCCTTGGCTATCTTGACATGCTTT
dot-bracket secondary structure
((((.((((((.((((((((((((.((((.(((((..((.((...((((...((((((((..........(((((((((((((((((((.....))))))
)))))))))))))...))))))))...))))..)).))...))))))))))))))))))).)).))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
AGAGTCATGTTTAGTAGCCAAGGATGACTTGCCTGCTCTTTTTCACCTCCATGATTCAATTTTATGTACAGTTTTGGATTACTATGCTTCTAAAGAGTAT
AGTAATTCAAAATCTTGTTGAATCTTTGAGGGTAACAGTTTCAGGCAGTCTCCTTGGCTATCTTGACATGCTTT
dot-bracket secondary structure
((((.((((((.((((((((((((.((((.(((((..((.((...((((...((((((((..........(((((((((((((((((((.....))))))
)))))))))))))...))))))))...))))..)).))...))))))))))))))))))).)).))))))))))
SIMILARITIES| miRBase aly-MIR169j: 8e-40 PMRD bna-miR169i: 7e-96 microPC miR169: 0.00003 | UniProt no hits RFAM MIR169_5: 9e-31 |
Identical with: bna-miR169i from PMRD (MNEST048358) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
