ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR171
source: miRBase, original name: bna-MIR171d (MI0006453)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACG miRNA* AGATATTGGTGCGGTTCAATC mismatches: 3 bulges: 0 |
pre-miRNA
ACAATGCGAGATATTGGTGCGGTTCAATCAGAAATCCACACTCTTTTGTTGTAGAGATCGGTTTGTTTGATTGAGCCGTGCCAATATCACGAGTGT
dot-bracket secondary structure
(((...((.((((((((..(((((((((((((...((...((((........))))...))....)))))))))))))..)))))))).))..)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
ACAATGCGAGATATTGGTGCGGTTCAATCAGAAATCCACACTCTTTTGTTGTAGAGATCGGTTTGTTTGATTGAGCCGTGCCAATATCACGAGTGT
dot-bracket secondary structure
(((...((.((((((((..(((((((((((((...((...((((........))))...))....)))))))))))))..)))))))).))..)))
SIMILARITIES| miRBase bol-MIR171a: 1e-49 PMRD bol-miR171a: 1e-49 microPC miR171: 0.000000001 | UniProt no hits RFAM MIR171_1: 2e-27 |
Identical with: bna-miR171d from PMRD (MNEST048366) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
