ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR390
source: miRBase, original name: bna-MIR390a (MI0006447)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCGCC miRNA* CGCTATCCATCCTGAGTTCTA mismatches: 2 bulges: 0 |
pre-miRNA
ATTTCAGGTGATGTAGTTGAGAAGTAGCTGTAAAGCTCAGGAGGGATAGCGCCATGTCTCACCGGTACTATAAAATGTTTGTATATCTATATTGGCGCTA
TCCATCCTGAGTTCTATGGCTTCTTCTTGCTTTTATCCTGAGAT
dot-bracket secondary structure
(((((((((((...(((.((((((.(((((((.(((((((((.(((((((((((..........((((............))))........))))))))
))).))))))))).))))))).))))))))).))).))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
ATTTCAGGTGATGTAGTTGAGAAGTAGCTGTAAAGCTCAGGAGGGATAGCGCCATGTCTCACCGGTACTATAAAATGTTTGTATATCTATATTGGCGCTA
TCCATCCTGAGTTCTATGGCTTCTTCTTGCTTTTATCCTGAGAT
dot-bracket secondary structure
(((((((((((...(((.((((((.(((((((.(((((((((.(((((((((((..........((((............))))........))))))))
))).))))))))).))))))).))))))))).))).))))))))
SIMILARITIES| miRBase bna-MIR390c: 1e-25 PMRD bna-miR390a: 4e-78 microPC miR390: 0.000002 | UniProt no hits RFAM MIR390: 2e-18 |
Identical with: bna-miR390a from PMRD (MNEST048370) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
