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ABOUT THIS RECORD
ID:
MNEST040295
species:
Brassica napus
miRNA family:
MIR393
source:
miRBase, original name:
bna-MIR393
(
MI0005772
)
Taxonomy by NCBI:
Brassica napus
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCCAAAGGGATCGCATTGATC
miRNA*
TCATGCGATCTCTTCGGA
mismatches:
1
bulges:
1
View larger
pre-miRNA
TCCAAAGGGATCGCATTGATC
CTAATCAAGCTGAGTTATTCCCGAATAATTATTTTAATTTTTTCTCAATGGAAAGATAGAAAAAAAAAATTTTGCTTCG
TTTTCCGGA
TCATGCGATCTCTTCGGA
dot-bracket secondary structure
(((.((((((((((((.((((
(.(((.((((..(((((((....))))))).((((.((((((((.....)))))))).))))...........)))).)
))....)))
)))))))))))))).)))
SIMILARITIES
miRBase
ath-MIR393b
:
1e-16
PMRD
bna-miR393
:
4e-50
microPC
miR393
:
0.000006
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
RTPCR
references
[
1
] Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM,
FEBS Lett. 581:1464-1474(2007).
,
"Computational identification of novel microRNAs and targets in Brassica napus"