ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR397
source: miRBase, original name: bna-MIR397a (MI0006445)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATTGAGTGCAGCGTTGATGT miRNA* ATCAACGTTGGCTCAATTATG mismatches: 1 bulges: 1 |
pre-miRNA
GAACATCATTGAGTGCAGCGTTGATGTGATTTACTTCTCTTTTTCATTGTTGAATGGATTAAAGCAATTTACATCAACGTTGGCTCAATTATGTTT
dot-bracket secondary structure
((((((.(((((((.((((((((((((((.((.(((.(((..((((....)))).)))...))).)).))))))))))))))))))))).))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
GAACATCATTGAGTGCAGCGTTGATGTGATTTACTTCTCTTTTTCATTGTTGAATGGATTAAAGCAATTTACATCAACGTTGGCTCAATTATGTTT
dot-bracket secondary structure
((((((.(((((((.((((((((((((((.((.(((.(((..((((....)))).)))...))).)).))))))))))))))))))))).))))))
SIMILARITIES| miRBase bna-MIR397b: 3e-47 PMRD bna-miR397a: 1e-49 microPC miR397: 0.00007 | UniProt no hits RFAM MIR397: 5e-46 |
Identical with: bna-miR397a from PMRD (MNEST048375) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
