ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR399
source: miRBase, original name: bna-MIR399 (MI0005774)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCCCGG miRNA* GGGCAAGATCTCTATTGGCAGA mismatches: 3 bulges: 1 |
pre-miRNA
ACAGGGCAAGATCTCTATTGGCAGAAAACCATTACTTAGATCTTTGCATCTCTTTCTGCATTGATTTGTAGTGAGTTCTCTGCCAAAGGAGATTTGCCCG
GT
dot-bracket secondary structure
...(((((.(((((((.((((((((.(((((((((..(((((..((((........))))..))))))))))).))).)))))))).)))))))))))).
..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM, FEBS Lett. 581:1464-1474(2007)., "Computational identification of novel microRNAs and targets in Brassica napus"
ACAGGGCAAGATCTCTATTGGCAGAAAACCATTACTTAGATCTTTGCATCTCTTTCTGCATTGATTTGTAGTGAGTTCTCTGCCAAAGGAGATTTGCCCG
GT
dot-bracket secondary structure
...(((((.(((((((.((((((((.(((((((((..(((((..((((........))))..))))))))))).))).)))))))).)))))))))))).
..
SIMILARITIES| miRBase aly-MIR399a: 7e-39 PMRD bna-miR399: 4e-53 microPC miR399: 5e-52 | UniProt no hits RFAM mir-399: 3e-29 |
Identical with: miR399 from microPC (MNEST045632) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM, FEBS Lett. 581:1464-1474(2007)., "Computational identification of novel microRNAs and targets in Brassica napus"
