ABOUT THIS RECORDspecies: Brassica napus
source: miRBase, original name: bna-MIR1140 (MI0006482)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACAGCCTAAACCAATCGGAGC miRNA* TCCGATTGGCTTTAGGCTGTTG mismatches: 0 bulges: 1 |
pre-miRNA
CTCAATCTTTTATATGGCTCCGATTGGCTTTAGGCTGTTGTGGCTTTGACTTCTTTCTAAAGTCTTCAAAATTTAGTTTTTCACAATCACGTTAAATTTT
TTTAAAAGTCACAGCCACAACAGCCTAAACCAATCGGAGCCATGGTGATG
dot-bracket secondary structure
....(((.....(((((((((((((((.(((((((((((((((((.((((((....(((((..........)))))...............(((((....
))))))))))).))))))))))))))))))))))))))))))))..))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
CTCAATCTTTTATATGGCTCCGATTGGCTTTAGGCTGTTGTGGCTTTGACTTCTTTCTAAAGTCTTCAAAATTTAGTTTTTCACAATCACGTTAAATTTT
TTTAAAAGTCACAGCCACAACAGCCTAAACCAATCGGAGCCATGGTGATG
dot-bracket secondary structure
....(((.....(((((((((((((((.(((((((((((((((((.((((((....(((((..........)))))...............(((((....
))))))))))).))))))))))))))))))))))))))))))))..))).
SIMILARITIES| miRBase no hits PMRD bna-miR1140b: 4e-69 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
