ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR2111
source: miRBase, original name: bna-MIR2111a (MI0011288)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAATCTGCATCCTGAGGTTTA miRNA* AGTCCTCGGGATGCGGATTACC mismatches: 3 bulges: 0 |
pre-miRNA
GATGACAAGTATTGGTGAGGACCGGGTAATCTGCATCCTGAGGTTTAAAGCTTGATTATACGCATAACATGCCGACGCATATAACTATGTGTTTTAGAAT
AGCTTTTAGTCCTCGGGATGCGGATTACCTCTTCCTTACTATACGTACACG
dot-bracket secondary structure
........((((.((((((((..((((((((((((((((((((...((((((.......(((((((..((((....)))).....)))))))........
))))))....))))))))))))))))))))..)))))))))))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR, Plant Physiol. 150:1541-1555(2009)., "Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing"
GATGACAAGTATTGGTGAGGACCGGGTAATCTGCATCCTGAGGTTTAAAGCTTGATTATACGCATAACATGCCGACGCATATAACTATGTGTTTTAGAAT
AGCTTTTAGTCCTCGGGATGCGGATTACCTCTTCCTTACTATACGTACACG
dot-bracket secondary structure
........((((.((((((((..((((((((((((((((((((...((((((.......(((((((..((((....)))).....)))))))........
))))))....))))))))))))))))))))..)))))))))))).......
SIMILARITIES| miRBase bra-MIR2111a: 3e-82 PMRD bna-miR2111a: 3e-82 microPC no hits | UniProt no hits RFAM no hits |
Identical with: bra-MIR2111a from miRBase (MNEST040327) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR, Plant Physiol. 150:1541-1555(2009)., "Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing"
