ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR159
source: miRBase, original name: bra-MIR159a (MI0010649)
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTA miRNA* GGGCTCCTTATAGTTCAAACG mismatches: 1 bulges: 0 |
pre-miRNA
AAAGTAGGGCTCCTTATAGTTCAAACGAGAGTTTAGCAGGGTAAAGAAAAGCTGCTAAGCTATGAATCCCATAAGCCCTAATCCTTATATATAAAAAGGAT
TTGGTTATATGGCTTACATATCTCAGGAGCTTTAACTTGCCCTTTAATTGCTTTTACTCTTCTTTGGATTGAAGGGAGCTCTACA
dot-bracket secondary structure
)..((((((((((((.(((((((((.((((((..((((((((((...((((((.((.((.((((.(..(((((((((..(((((((.........))))))
).)))).)))))..).)))).)).)).))))))...))))))......))))...)))))).))))))))).)))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
AAAGTAGGGCTCCTTATAGTTCAAACGAGAGTTTAGCAGGGTAAAGAAAAGCTGCTAAGCTATGAATCCCATAAGCCCTAATCCTTATATATAAAAAGGAT
TTGGTTATATGGCTTACATATCTCAGGAGCTTTAACTTGCCCTTTAATTGCTTTTACTCTTCTTTGGATTGAAGGGAGCTCTACA
dot-bracket secondary structure
)..((((((((((((.(((((((((.((((((..((((((((((...((((((.((.((.((((.(..(((((((((..(((((((.........))))))
).)))).)))))..).)))).)).)).))))))...))))))......))))...)))))).))))))))).)))))))))))).
SIMILARITIES| miRBase bna-MIR159: 3.0E-101 PMRD bra-miR159a: 2.0E-102 microPC miR159: 2.0E-99 | UniProt no hits RFAM 9MIR159: 4.0E-67 |
Identical with: miR159 from microPC (MNEST046701), bna-MIR159 from miRBase , miR159 from microPC , bra-miR159a from PMRD , miR159 from microPC , bna-miR159 from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
