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ABOUT THIS RECORD

ID: MNEST040313
species: Brassica rapa
miRNA family: MIR164
source: miRBase, original name: bra-MIR164a (MI0010651)

Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGAGAAGCAGGGCACGTGCA

miRNA*
 CACGTGCTCCACTCCTCCAAC

mismatches: 3
bulges: 0
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pre-miRNA
 CCTCCACGTTGGAGAAGCAGGGCACGTGCAAACCAACAAACACGAGATCTATCTCATGTAATTTGCACGTGCTCCACTCCTCCAACATGAGC

dot-bracket secondary structure
.(((...(((((((.((..(((((((((((((.......(((.((((....)))).)))..)))))))))))))..)).)))))))..))).


SIMILARITIES
miRBase bna-MIR164: 1e-43

PMRD bra-miR164a: 3e-47

microPC miR164: 0.00002		UniProt no hits

RFAM MIR164: 0.000000000000006

Identical with: bna-MIR164 from miRBase (MNEST040263)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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evidence: cloned, Northern

references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"



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