ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR164
source: miRBase, original name: bra-MIR164a (MI0010651)
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCA miRNA* CACGTGCTCCACTCCTCCAAC mismatches: 3 bulges: 0 |
pre-miRNA
CCCTCCACGTTGGAGAAGCAGGGCACGTGCAAACCAACAAACACGAGATCTATCTCATGTAATTTGCACGTGCTCCACTCCTCCAACATGAGC
dot-bracket secondary structure
).(((...(((((((.((..(((((((((((((.......(((.((((....)))).)))..)))))))))))))..)).)))))))..))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
CCCTCCACGTTGGAGAAGCAGGGCACGTGCAAACCAACAAACACGAGATCTATCTCATGTAATTTGCACGTGCTCCACTCCTCCAACATGAGC
dot-bracket secondary structure
).(((...(((((((.((..(((((((((((((.......(((.((((....)))).)))..)))))))))))))..)).)))))))..))).
SIMILARITIES| miRBase bna-MIR164: 1.0E-43 PMRD bra-miR164a: 3.0E-47 microPC miR164: 2.0E-5 | UniProt no hits RFAM 4MIR164: 6.0E-15 |
Identical with: bna-MIR164 from miRBase (MNEST040263), bra-miR164a from PMRD , bna-miR164 from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
