ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR167
source: miRBase, original name: bra-MIR167a (MI0010652)
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATGTTCGTAGTTTCACC mismatches: 1 bulges: 0 |
pre-miRNA
CGGTGCACCGGCATCTGATGAAGCTGCCAGCATGATCTAGTTAACTTTATTTCTCCGTTGTTTATCCATGACAATGGAAAAGGGATAAGTGTCGATTAGAT
CATGTTCGTAGTTTCACCCGTTGACTGTCGCATC
dot-bracket secondary structure
)(((((..(((((.(.(.(((((((((.(((((((((((((..(((((((..((((((((((.......)))))))))...)..))))).))..)))))))
)))))).))))))))).).).)).)))..)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
CGGTGCACCGGCATCTGATGAAGCTGCCAGCATGATCTAGTTAACTTTATTTCTCCGTTGTTTATCCATGACAATGGAAAAGGGATAAGTGTCGATTAGAT
CATGTTCGTAGTTTCACCCGTTGACTGTCGCATC
dot-bracket secondary structure
)(((((..(((((.(.(.(((((((((.(((((((((((((..(((((((..((((((((((.......)))))))))...)..))))).))..)))))))
)))))).))))))))).).).)).)))..)))))
SIMILARITIES| miRBase bna-MIR167c: 4.0E-72 PMRD bra-miR167a: 4.0E-72 microPC miR167: 3.0E-51 | UniProt no hits RFAM 1MIR167_1: 6.0E-65 |
Identical with: miR167 from microPC (MNEST045889), bna-MIR167c from miRBase , bra-miR167a from PMRD , bna-miR167c from PMRD |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
