ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR167
source: miRBase, original name: bra-MIR167b (MI0010653)
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATGTTCGCAGTTTCACC mismatches: 1 bulges: 0 |
pre-miRNA
CGGTGTACAGGCATCTGATGAAGCTGCCAGCATGATCTAATTAACTTTCTTTCTCTGTTGATTTTATGACAATGGAAAAGAGATGAGTGTCGATTAGATCA
TGTTCGCAGTTTCACCCATTGACTGTCGCACC
dot-bracket secondary structure
)(((((((((.((...(.(((((((((.(((((((((((((..((.(((..(((((.....((((((....)))))).))))).))).))..)))))))))
)))).))))))))).)...)).)))).)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
CGGTGTACAGGCATCTGATGAAGCTGCCAGCATGATCTAATTAACTTTCTTTCTCTGTTGATTTTATGACAATGGAAAAGAGATGAGTGTCGATTAGATCA
TGTTCGCAGTTTCACCCATTGACTGTCGCACC
dot-bracket secondary structure
)(((((((((.((...(.(((((((((.(((((((((((((..((.(((..(((((.....((((((....)))))).))))).))).))..)))))))))
)))).))))))))).)...)).)))).)))))
SIMILARITIES| miRBase bra-MIR167c: 6.0E-71 PMRD bra-miR167c: 6.0E-71 microPC miR167: 1.0E-25 | UniProt no hits RFAM 1MIR167_1: 2.0E-34 |
Identical with: bna-MIR167a from miRBase (MNEST040268), bra-miR167c from PMRD , bra-miR167b from PMRD , bra-MIR167c from miRBase , bna-miR167a from PMRD |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
