ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR167
source: miRBase, original name: bra-MIR167d (MI0010655)
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATGTTCGCAGTTTCACC mismatches: 1 bulges: 0 |
pre-miRNA
CGGCGCACCGGCATCTGATGAAGCTGCCAGCATGATCTAATTATCTTTCTTTCTCTGTTGACGATGGAAAAGACATGAGTGTTGATTAGATCATGTTCGCA
GTTTCACCCGTTGACTGTCTCGCC
dot-bracket secondary structure
)((((...(((((.(.(.(((((((((.(((((((((((((((.((((((((.((((((...)))))))))))...)))...))))))))))))))).)))
)))))).).).)).)))...))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
CGGCGCACCGGCATCTGATGAAGCTGCCAGCATGATCTAATTATCTTTCTTTCTCTGTTGACGATGGAAAAGACATGAGTGTTGATTAGATCATGTTCGCA
GTTTCACCCGTTGACTGTCTCGCC
dot-bracket secondary structure
)((((...(((((.(.(.(((((((((.(((((((((((((((.((((((((.((((((...)))))))))))...)))...))))))))))))))).)))
)))))).).).)).)))...))))
SIMILARITIES| miRBase bna-MIR167b: 3.0E-66 PMRD bra-miR167d: 3.0E-66 microPC miR167: 7.0E-12 | UniProt no hits RFAM 1MIR167_1: 3.0E-20 |
Identical with: bna-MIR167b from miRBase (MNEST040269), bra-miR167d from PMRD , bna-miR167b from PMRD |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
