ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR171
source: miRBase, original name: bra-MIR171a (MI0010656)
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACG miRNA* AGATATTGGTGTGGTTCAATC mismatches: 3 bulges: 0 |
pre-miRNA
GCGAGATATTGGTGTGGTTCAATCAGAAAACCACACTCTTTTGTTGTAGAGATCGGTTTGTTTGATTGAGCCGTGCCAATATCACG
dot-bracket secondary structure
)((.((((((((..((((((((((((((((((...((((........))))...))))).)))))))))))))..)))))))).))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
GCGAGATATTGGTGTGGTTCAATCAGAAAACCACACTCTTTTGTTGTAGAGATCGGTTTGTTTGATTGAGCCGTGCCAATATCACG
dot-bracket secondary structure
)((.((((((((..((((((((((((((((((...((((........))))...))))).)))))))))))))..)))))))).))
SIMILARITIES| miRBase bna-MIR171e: 4.0E-43 PMRD bra-miR171a: 4.0E-43 microPC miR171: 1.0E-9 | UniProt no hits RFAM 1MIR171_1: 1.0E-27 |
Identical with: bna-miR171e from PMRD (MNEST048367), bra-miR171a from PMRD , bna-MIR171e from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
