ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR171
source: miRBase, original name: bra-MIR171b (MI0010657)
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACG miRNA* AGATATTAGTGCGGTTCAATC mismatches: 4 bulges: 0 |
pre-miRNA
ATGGTCAAGCGAGATATTAGTGCGGTTCAATCAAATAGTCTCACTCTTAGTTGATAGAGATTGATTTTGTTCGATTGAGCCGTGCCAATATCACGCATATA
ACCA
dot-bracket secondary structure
).(((...(((.((((((.(..((((((((((.(((((..(((.((((........)))).)))..))))).))))))))))..).)))))).))).....
))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
ATGGTCAAGCGAGATATTAGTGCGGTTCAATCAAATAGTCTCACTCTTAGTTGATAGAGATTGATTTTGTTCGATTGAGCCGTGCCAATATCACGCATATA
ACCA
dot-bracket secondary structure
).(((...(((.((((((.(..((((((((((.(((((..(((.((((........)))).)))..))))).))))))))))..).)))))).))).....
))).
SIMILARITIES| miRBase bna-MIR171a: 2.0E-54 PMRD bra-miR171b: 2.0E-54 microPC miR171: 3.0E-7 | UniProt no hits RFAM 1MIR171_1: 6.0E-15 |
Identical with: bna-miR171a from PMRD (MNEST048363), bra-miR171b from PMRD , bna-MIR171a from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
