ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR171
source: miRBase, original name: bra-MIR171c (MI0010658)
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACG miRNA* AGATATTAGTGCGGTTCAATC mismatches: 4 bulges: 0 |
pre-miRNA
CGCGAGATATTAGTGCGGTTCAATCAAATAGTCGTACTCTTAGCTATTAGAGATCGGTTTTGTTCGATTGAGCCGTGCCAATATCACGC
dot-bracket secondary structure
)(((.((((((.(..((((((((((.((((((((..((((........))))..)))..))))).))))))))))..).)))))).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
CGCGAGATATTAGTGCGGTTCAATCAAATAGTCGTACTCTTAGCTATTAGAGATCGGTTTTGTTCGATTGAGCCGTGCCAATATCACGC
dot-bracket secondary structure
)(((.((((((.(..((((((((((.((((((((..((((........))))..)))..))))).))))))))))..).)))))).)))
SIMILARITIES| miRBase bna-MIR171c: 7.0E-45 PMRD bra-miR171c: 7.0E-45 microPC miR171: 3.0E-7 | UniProt no hits RFAM 1MIR171_1: 6.0E-27 |
Identical with: bna-miR171c from PMRD (MNEST048365), bra-miR171c from PMRD , bna-MIR171c from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
