ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR2111
source: miRBase, original name: bra-MIR2111a (MI0015372)
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAATCTGCATCCTGAGGTTTA miRNA* AGTCCTCGGGATGCGGATTACC mismatches: 3 bulges: 0 |
pre-miRNA
CAGATGACAAGTATTGGTGAGGACCGGGTAATCTGCATCCTGAGGTTTAAAGCTTGATTATACGCATAACATGCCGACGCATATAACTATGTGTTTTAGA
ATAGCTTTTAGTCCTCGGGATGCGGATTACCTCTTCCTTACTATACGTACACGGTTACATG
dot-bracket secondary structure
((..((((..(((((((((((((..((((((((((((((((((((...((((((.......(((((((..((((....)))).....)))))))......
..))))))....))))))))))))))))))))..)))))))))...))))...))))..))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ, Plant Physiol. 151:2120-2132(2009)., "Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing"
CAGATGACAAGTATTGGTGAGGACCGGGTAATCTGCATCCTGAGGTTTAAAGCTTGATTATACGCATAACATGCCGACGCATATAACTATGTGTTTTAGA
ATAGCTTTTAGTCCTCGGGATGCGGATTACCTCTTCCTTACTATACGTACACGGTTACATG
dot-bracket secondary structure
((..((((..(((((((((((((..((((((((((((((((((((...((((((.......(((((((..((((....)))).....)))))))......
..))))))....))))))))))))))))))))..)))))))))...))))...))))..))
SIMILARITIES| miRBase bna-MIR2111a: 3e-82 PMRD bna-miR2111a: 3e-82 microPC no hits | UniProt no hits RFAM no hits |
Identical with: bna-MIR2111a from miRBase (MNEST040302) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ, Plant Physiol. 151:2120-2132(2009)., "Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing"
