ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR156
source: miRBase, original name: rco-MIR156b (MI0013371)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACTTCTCTTTCTGTCAAG mismatches: 1 bulges: 2 |
pre-miRNA
GAAATTGACAGAAGAGAGTGAGCACACAGAGGCATTTGTATAAATCTATACCCTTGCTTTTGCGTGCTCACTTCTCTTTCTGTCAAGCTTCC
dot-bracket secondary structure
(((.(((((((((((((((((((((.((((((((...(((((....)))))...)))))))).)))))))).)))).)))))))))..))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
GAAATTGACAGAAGAGAGTGAGCACACAGAGGCATTTGTATAAATCTATACCCTTGCTTTTGCGTGCTCACTTCTCTTTCTGTCAAGCTTCC
dot-bracket secondary structure
(((.(((((((((((((((((((((.((((((((...(((((....)))))...)))))))).)))))))).)))).)))))))))..))).
SIMILARITIES| miRBase tcc-MIR156g: 2e-33 PMRD ptc-miR156c: 1e-30 microPC miR156: 0.0000000000003 | UniProt no hits RFAM mir-156: 5e-40 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
