ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR160
source: miRBase, original name: rco-MIR160a (MI0013379)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCATGCAAGGAGCCATGCATG mismatches: 2 bulges: 0 |
pre-miRNA
TTGTGTGCCTGGCTCCCTGTATGCCATTTGTGAAGTTCATCAGAAGCTTGGTGGTCTCCGCAGATGGCATGCAAGGAGCCATGCATGCTGCT
dot-bracket secondary structure
..((((((.(((((((.(((((((((((((((.((..((((((....))))))..)).))))))))))))))).))))))).))))))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
TTGTGTGCCTGGCTCCCTGTATGCCATTTGTGAAGTTCATCAGAAGCTTGGTGGTCTCCGCAGATGGCATGCAAGGAGCCATGCATGCTGCT
dot-bracket secondary structure
..((((((.(((((((.(((((((((((((((.((..((((((....))))))..)).))))))))))))))).))))))).))))))....
SIMILARITIES| miRBase vvi-MIR160d: 0.00000000007 PMRD vvi-miR160d: 0.00000000007 microPC miR160: 0.00000007 | UniProt no hits RFAM mir-160: 2e-42 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
