ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR160
source: miRBase, original name: rco-MIR160b (MI0013380)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCGAGGAGCCAAGCATA mismatches: 2 bulges: 0 |
pre-miRNA
GGTTATGCCTGGCTCCCTGTATGCCACAAGCTAGAGTTCATTCCCTTCCATGGATTGGCTATTGCCGGTGGCGTGCGAGGAGCCAAGCATACTCTC
dot-bracket secondary structure
(..(((((.(((((((.((((((((((..((...(((.((.(((.......))).)))))...))..)))))))))).))))))).)))))..)..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
GGTTATGCCTGGCTCCCTGTATGCCACAAGCTAGAGTTCATTCCCTTCCATGGATTGGCTATTGCCGGTGGCGTGCGAGGAGCCAAGCATACTCTC
dot-bracket secondary structure
(..(((((.(((((((.((((((((((..((...(((.((.(((.......))).)))))...))..)))))))))).))))))).)))))..)..
SIMILARITIES| miRBase vvi-MIR160c: 8e-17 PMRD vvi-miR160c: 8e-17 microPC miR160: 0.0000003 | UniProt no hits RFAM mir-160: 9e-45 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
