ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR160
source: miRBase, original name: rco-MIR160c (MI0013432)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGAATGCCA miRNA* GCATGAGGGGAGTCATGCAGG mismatches: 3 bulges: 0 |
pre-miRNA
GTATCTGCCTGGCTCCCTGAATGCCATCTAAGAAGCTTGTCAAACAGTGTTGGCAATTTTCCTATTTGGCATGAGGGGAGTCATGCAGGCCCGT
dot-bracket secondary structure
(..(((((.(((((((((..((((((..((.((((.(((((((......))))))).)))).))..))))))..))))))))).)))))..)..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
GTATCTGCCTGGCTCCCTGAATGCCATCTAAGAAGCTTGTCAAACAGTGTTGGCAATTTTCCTATTTGGCATGAGGGGAGTCATGCAGGCCCGT
dot-bracket secondary structure
(..(((((.(((((((((..((((((..((.((((.(((((((......))))))).)))).))..))))))..))))))))).)))))..)..
SIMILARITIES| miRBase vvi-MIR160b: 6e-30 PMRD vvi-miR160e: 6e-30 microPC no hits | UniProt no hits RFAM mir-160: 0.0000000000004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
