ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR164
source: miRBase, original name: rco-MIR164c (MI0013384)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCA miRNA* CATGTGCCCGTCTTCCCCATC mismatches: 5 bulges: 0 |
pre-miRNA
CAAGATGGAGAAGCAGGGCACGTGCATTACTAACTCATGCATAATTGAACATACATACATACGCATTTTTCTTGCTGGAGGTTAGTTCTTCATGTGCCCG
TCTTCCCCATCATGAC
dot-bracket secondary structure
((.(((((.((((..(((((((((....((((((((...((....))...............(((.......)))..)).))))))....))))))))).
.)))).))))).))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
CAAGATGGAGAAGCAGGGCACGTGCATTACTAACTCATGCATAATTGAACATACATACATACGCATTTTTCTTGCTGGAGGTTAGTTCTTCATGTGCCCG
TCTTCCCCATCATGAC
dot-bracket secondary structure
((.(((((.((((..(((((((((....((((((((...((....))...............(((.......)))..)).))))))....))))))))).
.)))).))))).))..
SIMILARITIES| miRBase ptc-MIR164e: 1e-16 PMRD ppl-miR164: 7e-18 microPC miR164: 0.000000000000006 | UniProt no hits RFAM MIR164: 3e-60 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
