ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR164
source: miRBase, original name: rco-MIR164d (MI0013385)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACATGCT miRNA* CATGTGCCTTTGTTCTCCAGC mismatches: 3 bulges: 0 |
pre-miRNA
CATGCTGGAGAAGCAGGGCACATGCTAGATTTATCAGAATGAAAAACCTGAGAATTTTGCATGTGCCTTTGTTCTCCAGCTTGGA
dot-bracket secondary structure
((.(((((((((..(((((((((((.((((((.((((..(....)..)))))))))).)))))))))))..))))))))).))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
CATGCTGGAGAAGCAGGGCACATGCTAGATTTATCAGAATGAAAAACCTGAGAATTTTGCATGTGCCTTTGTTCTCCAGCTTGGA
dot-bracket secondary structure
((.(((((((((..(((((((((((.((((((.((((..(....)..)))))))))).)))))))))))..))))))))).))..
SIMILARITIES| miRBase tcc-MIR164c: 0.00000000007 PMRD ptc-miR164f: 0.000000001 microPC no hits | UniProt no hits RFAM MIR164: 7e-42 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
