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ABOUT THIS RECORD

ID: MNEST040347
species: Ricinus communis
miRNA family: MIR166
source: miRBase, original name: rco-MIR166a (MI0013386)

Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC

miRNA*
GGAATGTTGTCTGGTTCAAGG

mismatches: 3
bulges: 0

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pre-miRNA
TAAGGGGAATGTTGTCTGGTTCAAGGCCTACCTATTGATCTGTTTCAGTTTCATTCAATATACTGAAAAATCTGTATATGGGAAACTATCCTGTGGTCGA
TTTGATCATTTCTTAGGATCTCCTCGGACCAGGCTTCATTCCCCTTAAT


dot-bracket secondary structure
(((((((((((..(((((((((.(((....((((.(((((..(((((((............)))))))((((....(((((((.....)))))))...))
)).))))).....))))....))).)))))))))..)))))))))))..



SIMILARITIES
miRBase ptc-MIR166l: 0.0000005

PMRD ptc-miR166l: 0.0000005

microPC miR166: 0.000002
UniProt no hits

RFAM mir-166: 9e-80

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR

references

[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"




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