ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR167
source: miRBase, original name: rco-MIR167a (MI0013391)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GGTCATGCTCTGACAGCCTCACT mismatches: 2 bulges: 2 |
pre-miRNA
AAAGGTGAAGCTGCCAGCATGATCTAGCTTTGGTTAGTGAGACAGCTGAAAGAAAGATACAGATAACACATGGTATCTAAGCAATAGTGCTAACCCTAGC
TAGGTCATGCTCTGACAGCCTCACTCCTTC
dot-bracket secondary structure
...(((((.(((((.((((((((((((((..((((((((.....(((.......((((((............)))))).))).....))))))))..)))
)))))))))))..).)))).))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
AAAGGTGAAGCTGCCAGCATGATCTAGCTTTGGTTAGTGAGACAGCTGAAAGAAAGATACAGATAACACATGGTATCTAAGCAATAGTGCTAACCCTAGC
TAGGTCATGCTCTGACAGCCTCACTCCTTC
dot-bracket secondary structure
...(((((.(((((.((((((((((((((..((((((((.....(((.......((((((............)))))).))).....))))))))..)))
)))))))))))..).)))).))))).....
SIMILARITIES| miRBase tcc-MIR167b: 7e-18 PMRD ptc-miR167d: 1e-16 microPC miR167: 0.000000000007 | UniProt no hits RFAM MIR167_1: 2e-68 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
