ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR167_1
source: miRBase, original name: rco-MIR167c (MI0013393)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTGG miRNA* AGATCATGTGGCAGTTTCACC mismatches: 0 bulges: 1 |
pre-miRNA
ATAGTTGAAGCTGCCAGCATGATCTGGAGCTTTTCTATCCAGGAGAGACTAGATCATGTGGCAGTTTCACCTGTTG
dot-bracket secondary structure
((((.(((((((((((.((((((((((..(((((((....))))))).))))))))))))))))))))).))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
ATAGTTGAAGCTGCCAGCATGATCTGGAGCTTTTCTATCCAGGAGAGACTAGATCATGTGGCAGTTTCACCTGTTG
dot-bracket secondary structure
((((.(((((((((((.((((((((((..(((((((....))))))).))))))))))))))))))))).))))..
SIMILARITIES| miRBase vvi-MIR167b: 0.0000000000002 PMRD vvi-miR167b: 0.0000000000002 microPC miR167: 0.00001 | UniProt no hits RFAM MIR167_1: 1e-36 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
