ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR168
source: miRBase, original name: rco-MIR168 (MI0013394)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
CTAATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTTTTCTATTTCTAATGATTTCCAGGCGGCGAAAAGTTATTGGTCAAGATTAGATGGAAAGTGAAT
TGGATCCCGCCTTGCATCAACTGAATCGAAG
dot-bracket secondary structure
...(((((.((((((((((.(((((.(..(((.(((((((....((((((.....((((..(((.....))).)))).....)))))).))))))).)))
..).))))).)))))))))).))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
CTAATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTTTTCTATTTCTAATGATTTCCAGGCGGCGAAAAGTTATTGGTCAAGATTAGATGGAAAGTGAAT
TGGATCCCGCCTTGCATCAACTGAATCGAAG
dot-bracket secondary structure
...(((((.((((((((((.(((((.(..(((.(((((((....((((((.....((((..(((.....))).)))).....)))))).))))))).)))
..).))))).)))))))))).))))).....
SIMILARITIES| miRBase crt-MIR168: 0.0000000000001 PMRD rco-miR168: 2e-70 microPC miR168: 0.0000000001 | UniProt no hits RFAM MIR168: 4e-69 |
Identical with: rco-miR168 from PMRD (MNEST054388) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
