ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR169
source: miRBase, original name: rco-MIR169b (MI0013396)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTTGTTCTTGGCTACA mismatches: 3 bulges: 0 |
pre-miRNA
TAATTCAGCCAAGGATGACTTGCCGGCACAGCCTATATATGTCTTCTACTCACAGCTGCTAGCTACCGGCAAGTTGTTCTTGGCTACATTGTA
dot-bracket secondary structure
......(((((((((..(((((((((...(((.......(((.........))).......))).)))))))))..)))))))))........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
TAATTCAGCCAAGGATGACTTGCCGGCACAGCCTATATATGTCTTCTACTCACAGCTGCTAGCTACCGGCAAGTTGTTCTTGGCTACATTGTA
dot-bracket secondary structure
......(((((((((..(((((((((...(((.......(((.........))).......))).)))))))))..)))))))))........
SIMILARITIES| miRBase ptc-MIR169h: 0.000000005 PMRD ptc-miRf12269-akr: 0.000000005 microPC miR169: 0.000004 | UniProt no hits RFAM MIR169_2: 1e-46 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
