ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR171
source: miRBase, original name: rco-MIR171b (MI0013399)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACG miRNA* AGATATTGGTGCGGTTCAATC mismatches: 3 bulges: 0 |
pre-miRNA
GTACGAGATATTGGTGCGGTTCAATCAGAGATCATTGCTCTATATATAGAGCTTTTGTTGTTTGATTGAGCCGTGCCAATATCACGTGCAT
dot-bracket secondary structure
(((((.((((((((..(((((((((((((.(.((..((((((....))))))...)).).)))))))))))))..)))))))).)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
GTACGAGATATTGGTGCGGTTCAATCAGAGATCATTGCTCTATATATAGAGCTTTTGTTGTTTGATTGAGCCGTGCCAATATCACGTGCAT
dot-bracket secondary structure
(((((.((((((((..(((((((((((((.(.((..((((((....))))))...)).).)))))))))))))..)))))))).)))))..
SIMILARITIES| miRBase ptc-MIR171b: 0.00000000000007 PMRD ptc-miR171b: 0.00000000000007 microPC miR171: 3e-16 | UniProt no hits RFAM MIR171_1: 2e-45 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
