ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR171
source: miRBase, original name: rco-MIR171d (MI0013401)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGCCCGGTTCACTCAGA mismatches: 2 bulges: 0 |
pre-miRNA
TGTGATGTTGGCCCGGTTCACTCAGACAAAAACGATGTGTTTTCTCAAGCATTTGTTTTTCGAAACGCTTGATATGTTAACACAAGCATAATGGCCTTTG
ATTGAGCCGTGCCAATATCTTAGT
dot-bracket secondary structure
...(((((((((.(((((((.(((((.........((((((..(((((((.((((.....))))..))))))...)..)))))).((......)).))))
).))))))).))))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
TGTGATGTTGGCCCGGTTCACTCAGACAAAAACGATGTGTTTTCTCAAGCATTTGTTTTTCGAAACGCTTGATATGTTAACACAAGCATAATGGCCTTTG
ATTGAGCCGTGCCAATATCTTAGT
dot-bracket secondary structure
...(((((((((.(((((((.(((((.........((((((..(((((((.((((.....))))..))))))...)..)))))).((......)).))))
).))))))).))))))))).....
SIMILARITIES| miRBase zma-MIR171e: 0.0000001 PMRD zma-miR171e: 0.0000001 microPC miR171: 0.000002 | UniProt no hits RFAM MIR171_1: 6e-65 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
