ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR171
source: miRBase, original name: rco-MIR171e (MI0013402)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGAATGGCTCAATCAAA mismatches: 1 bulges: 0 |
pre-miRNA
GGGGATGTTGGAATGGCTCAATCAAATCAAATCTCCCAAAGTTTTGGGTCCTTTAATCTGATTGAGCCGTGCCAATATCCCCCA
dot-bracket secondary structure
(((((((((((.((((((((((((.((.(((...(((((....)))))...))).)).)))))))))))).)))))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
GGGGATGTTGGAATGGCTCAATCAAATCAAATCTCCCAAAGTTTTGGGTCCTTTAATCTGATTGAGCCGTGCCAATATCCCCCA
dot-bracket secondary structure
(((((((((((.((((((((((((.((.(((...(((((....)))))...))).)).)))))))))))).)))))))))))..
SIMILARITIES| miRBase vvi-MIR171i: 5e-33 PMRD vvi-miR171i: 5e-33 microPC miR171: 5e-21 | UniProt no hits RFAM MIR171_1: 3e-41 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
