ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR172
source: miRBase, original name: rco-MIR172 (MI0013405)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATCTTGATGATGCTGCAG miRNA* GGAGCATCATCAAGATTCACA mismatches: 3 bulges: 0 |
pre-miRNA
CTGATGGAGCATCATCAAGATTCACAAACTTTATCTAGGGCTAGTGGGTTGTTGTGGTCCCTTTTCTTTTTCTTTTTTTCTTTTTCTCTTGCTTCAATCC
AATAGTCCCTTTGATATGGGAATCTTGATGATGCTGCAGCGGCA
dot-bracket secondary structure
(((.((.((((((((((((((((.((.....((((.(((((((.(((((((..(..(...............................)..)..))))))
).))).))))..)))))).)))))))))))))))).)).)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
CTGATGGAGCATCATCAAGATTCACAAACTTTATCTAGGGCTAGTGGGTTGTTGTGGTCCCTTTTCTTTTTCTTTTTTTCTTTTTCTCTTGCTTCAATCC
AATAGTCCCTTTGATATGGGAATCTTGATGATGCTGCAGCGGCA
dot-bracket secondary structure
(((.((.((((((((((((((((.((.....((((.(((((((.(((((((..(..(...............................)..)..))))))
).))).))))..)))))).)))))))))))))))).)).)))..
SIMILARITIES| miRBase ptc-MIR172g: 0.0000000000001 PMRD ptc-miRf12020-akr: 0.0000000000001 microPC miR172: 0.000007 | UniProt no hits RFAM mir-172: 7e-34 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
