ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR319
source: miRBase, original name: rco-MIR319a (MI0013406)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACTGAAGGGAGCTCCCT miRNA* AGAGCTTTCTTCAGTCCACTC mismatches: 4 bulges: 0 |
pre-miRNA
TTAAGAGAGCTTTCTTCAGTCCACTCATGGGTGGCGGTAGGATTTAATTAGCTGCCGACTCATTCATCCAAATACTGAGTTAAAAAGTTCAGAAAACAAA
AGGGGCGGGTGCTGTAGAAAAGAAGGTTTACCCAGTAAATGAGTGAATGATGCGGGAGACAAATTGAATCTTAAGCTTCCTGTACTTGGACTGAAGGGAG
CTCCCTTTACT
dot-bracket secondary structure
..(((.(((((..((((((((((...(((((.(((..((((((((((((.(((.(((..(((((((..((....(((((........)))))........
......(((((((...........)))..))))......))..)))))))..))).)).).)))))))))))).))).)))))...))))))))))..))
))).)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
TTAAGAGAGCTTTCTTCAGTCCACTCATGGGTGGCGGTAGGATTTAATTAGCTGCCGACTCATTCATCCAAATACTGAGTTAAAAAGTTCAGAAAACAAA
AGGGGCGGGTGCTGTAGAAAAGAAGGTTTACCCAGTAAATGAGTGAATGATGCGGGAGACAAATTGAATCTTAAGCTTCCTGTACTTGGACTGAAGGGAG
CTCCCTTTACT
dot-bracket secondary structure
..(((.(((((..((((((((((...(((((.(((..((((((((((((.(((.(((..(((((((..((....(((((........)))))........
......(((((((...........)))..))))......))..)))))))..))).)).).)))))))))))).))).)))))...))))))))))..))
))).)))....
SIMILARITIES| miRBase ptc-MIR319a: 6e-38 PMRD ptc-miR319a: 6e-38 microPC miR319: 2e-35 | UniProt no hits RFAM MIR159: 1e-116 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
