ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR319
source: miRBase, original name: rco-MIR319b (MI0013407)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACTGAAGGGAGCTCCCT miRNA* GGAGCTCTCTTCAGTCCAGTC mismatches: 1 bulges: 0 |
pre-miRNA
AAGAAGGAGCTCTCTTCAGTCCAGTCCAAGGCGGTTGAGGGCTGGGACTTAGCTGCTGACTCGTTGGTTCAAGAGCTCATCATCATCAATGTGTAAGAGA
TGTCTTTTTGATCCAACGAAGCTGGAGCTGTGTTCAGTTATGGCTGTCATGTCTTGGACTGAAGGGAGCTCCCTCCAAT
dot-bracket secondary structure
..((.(((((((((((((((((((..((.(((((((...(((((((...(((((.(.(..(((((((.(((((((..((((.((............))))
))..))))))).)))))))..).).)))))..)))))))..))))))).))..))))))))))))))))))).))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
AAGAAGGAGCTCTCTTCAGTCCAGTCCAAGGCGGTTGAGGGCTGGGACTTAGCTGCTGACTCGTTGGTTCAAGAGCTCATCATCATCAATGTGTAAGAGA
TGTCTTTTTGATCCAACGAAGCTGGAGCTGTGTTCAGTTATGGCTGTCATGTCTTGGACTGAAGGGAGCTCCCTCCAAT
dot-bracket secondary structure
..((.(((((((((((((((((((..((.(((((((...(((((((...(((((.(.(..(((((((.(((((((..((((.((............))))
))..))))))).)))))))..).).)))))..)))))))..))))))).))..))))))))))))))))))).))....
SIMILARITIES| miRBase vvi-MIR319b: 3e-24 PMRD vvi-miR319b: 3e-24 microPC miR319: 0.0000000000006 | UniProt no hits RFAM MIR159: 1e-97 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
