ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR390
source: miRBase, original name: rco-MIR390b (MI0013411)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCGCC miRNA* CGCTATCCATCCTGAGTTTCA mismatches: 2 bulges: 0 |
pre-miRNA
CTAATAAGCTCAGGAGGGATAGCGCCATGGATGGATATGTGTTTTTATGAATATGACTCGTCTTTTCTTGGCTTGCTTTTTTTATCTCTTCTATAGCGCT
ATCCATCCTGAGTTTCATTGGT
dot-bracket secondary structure
(((((((((((((((.(((((((((.(((((.(((((.((((((....)))))).....(((.......)))..........)))))..))))).)))))
)))).)))))))))).))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
CTAATAAGCTCAGGAGGGATAGCGCCATGGATGGATATGTGTTTTTATGAATATGACTCGTCTTTTCTTGGCTTGCTTTTTTTATCTCTTCTATAGCGCT
ATCCATCCTGAGTTTCATTGGT
dot-bracket secondary structure
(((((((((((((((.(((((((((.(((((.(((((.((((((....)))))).....(((.......)))..........)))))..))))).)))))
)))).)))))))))).))))).
SIMILARITIES| miRBase ghr-MIR390c: 0.000000002 PMRD ghr-miR390c: 0.000000002 microPC miR390: 0.000000006 | UniProt no hits RFAM MIR390: 3e-51 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
