ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR395
source: miRBase, original name: rco-MIR395a (MI0013413)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGAAGTGTTTGGGGGAACTC miRNA* GTTCCCTTGAACACTTCACTG mismatches: 3 bulges: 0 |
pre-miRNA
CTAGAGTTCCCTTGAACACTTCACTGGGACGAAAATCCATTCTTCCAACTGAAGTGTTTGGGGGAACTCTTGGT
dot-bracket secondary structure
(.((((((((((..(((((((((...(((.(((......))).)))...)))))))))..)))))))))).)..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
CTAGAGTTCCCTTGAACACTTCACTGGGACGAAAATCCATTCTTCCAACTGAAGTGTTTGGGGGAACTCTTGGT
dot-bracket secondary structure
(.((((((((((..(((((((((...(((.(((......))).)))...)))))))))..)))))))))).)..
SIMILARITIES| miRBase rco-MIR395e: 1e-36 PMRD vvi-miR395m: 0.000000003 microPC miR395: 0.00001 | UniProt no hits RFAM mir-395: 2e-35 |
Identical with: rco-MIR395e from miRBase (MNEST040378) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
