ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR395
source: miRBase, original name: rco-MIR395b (MI0013414)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGAAGTGTTTGGGGGAACTC miRNA* GTTCCCCTGGCCGCTTCATTG mismatches: 4 bulges: 0 |
pre-miRNA
CTGGAGTTCCCCTGGCCGCTTCATTGGGGCTATTATATACCCTTAATTATACATGTGTTATTCCTGCCCTACTGAAGTGTTTGGGGGAACTCTAGGT
dot-bracket secondary structure
((((((((((((..(.(((((((.((((((......((((..............)))).......)))))).))))))).)..))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
CTGGAGTTCCCCTGGCCGCTTCATTGGGGCTATTATATACCCTTAATTATACATGTGTTATTCCTGCCCTACTGAAGTGTTTGGGGGAACTCTAGGT
dot-bracket secondary structure
((((((((((((..(.(((((((.((((((......((((..............)))).......)))))).))))))).)..))))))))))))..
SIMILARITIES| miRBase tcc-MIR395a: 0.00000007 PMRD vvi-miR395m: 0.0000003 microPC miR395: 0.00007 | UniProt no hits RFAM mir-395: 6e-49 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
