ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR395
source: miRBase, original name: rco-MIR395c (MI0013415)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGAAGTGTTTGGGGGAACTC miRNA* GTTCCCTTGAGCACTTCACTG mismatches: 4 bulges: 0 |
pre-miRNA
CTAGAGTTCCCTTGAGCACTTCACTGGGATGAAAAAAGGTCCAGTCTTCCTTCCTACTGAAGTGTTTGGGGGAACTCCTGGT
dot-bracket secondary structure
((((((((((((..(((((((((.(((((.(((.............)))..))))).)))))))))..)))))))).)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
CTAGAGTTCCCTTGAGCACTTCACTGGGATGAAAAAAGGTCCAGTCTTCCTTCCTACTGAAGTGTTTGGGGGAACTCCTGGT
dot-bracket secondary structure
((((((((((((..(((((((((.(((((.(((.............)))..))))).)))))))))..)))))))).)))).
SIMILARITIES| miRBase vvi-MIR395m: 0.000000000004 PMRD vvi-miR395m: 0.000000000004 microPC miR395: 0.00006 | UniProt no hits RFAM mir-395: 4e-40 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
