ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR396
source: miRBase, original name: rco-MIR396 (MI0013418)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GTTCAAGAAAGCTGTGGGAGA mismatches: 0 bulges: 0 |
pre-miRNA
TGCTTTTCCACAGCTTTCTTGAACTTCTTCTTCTTCTTCTTCTTCTTCTTAGATTTCTTTCTCATTGCCTATATCTTTCTTGATGTGGCACAGAATAAGT
TCAAGAAAGCTGTGGGAGAACATG
dot-bracket secondary structure
((.(((((((((((((((((((((((.((((............(((....)))............((((.(((((......))))))))).)))).))))
))))))))))))))))))).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
TGCTTTTCCACAGCTTTCTTGAACTTCTTCTTCTTCTTCTTCTTCTTCTTAGATTTCTTTCTCATTGCCTATATCTTTCTTGATGTGGCACAGAATAAGT
TCAAGAAAGCTGTGGGAGAACATG
dot-bracket secondary structure
((.(((((((((((((((((((((((.((((............(((....)))............((((.(((((......))))))))).)))).))))
))))))))))))))))))).))..
SIMILARITIES| miRBase ptc-MIR396e: 0.000002 PMRD ptc-miRf11357-akr: 0.000002 microPC miR396: 0.0001 | UniProt no hits RFAM MIR396: 6e-28 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
