ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR397
source: miRBase, original name: rco-MIR397 (MI0013419)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATTGAGTGCAGCGTTGATG miRNA* CCAGCGCTGCATTCAATCATG mismatches: 2 bulges: 0 |
pre-miRNA
AAACATCATTGAGTGCAGCGTTGATGAATTCCCCTACATGACATATTTCTGTTGGTTAATTCATTACCAATATCCCTTCTTTAAAAAAAGAAGTAAACCT
TTTTGGGAATAGATGGTTTTGGATGATTTCACCAGCGCTGCATTCAATCATGTTTTT
dot-bracket secondary structure
((((((.((((((((((((((((.((((.((.((.(((.((......))))).))...(((((..((((......(((((((....)))))))....(((
....)))......))))..))))))).)))).)))))))))))))))).))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
AAACATCATTGAGTGCAGCGTTGATGAATTCCCCTACATGACATATTTCTGTTGGTTAATTCATTACCAATATCCCTTCTTTAAAAAAAGAAGTAAACCT
TTTTGGGAATAGATGGTTTTGGATGATTTCACCAGCGCTGCATTCAATCATGTTTTT
dot-bracket secondary structure
((((((.((((((((((((((((.((((.((.((.(((.((......))))).))...(((((..((((......(((((((....)))))))....(((
....)))......))))..))))))).)))).)))))))))))))))).))))))..
SIMILARITIES| miRBase ptc-MIR397a: 0.00000000003 PMRD ptc-miR397a: 0.00000000003 microPC miR397: 0.0000005 | UniProt no hits RFAM MIR397: 1e-57 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
